Human Genome Project

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Human Genome Project

• A Vital Legacy Booklet about the DOE program that gave rise to the HGP
• DOE and NIH Research Sites
• DOE and the Human Genome Project
• GeneCards Database human genes, products, and involvement in disease
• Genes and Genetic Diseases by Chromosome Data Reports and Statistics
• Genome Meetings and Reports
• Genome Meetings Calendar
• Goals of the Human Genome Project
• Human Chromosome Launchpad Links to Research Resources by Chromosome
• Human Genome Organisation HUGO
• Human Genome Project Benefits current and potential applications of genome research
• Human Genome Project Contacts
• Human Genome Project Progress
• Human Genome Project Publications
• Human Genome Project Research in Progress
• Human Genome Project Resources from GDB; genome centers, chromosome-specific servers, databases, model organisms, online journals, vendors
• Human Genome Project Timeline
• Human Genome Project What's New
• Human Genome Project: A Public Health Perspective from CDC
• Joint Genome Institute Department of Energy sequencing institution
• Lawrence Livermore National Laboratory Genome Center
• Model Organisms for Biomedical Research National Institutes of Health
• Molecular Genetics Labs Cedars-Sinai Medical Center data on human chromosomes 11 and 21, BAC-STS map, mouse data
• National Institutes of Health National Human Genome Research Institute
• National Science Foundation
• Nature Genetics: A Ten-Year Retrospective 1992-2002
• Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop IV (1994)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop V (1996)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI (1997)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VIII (2000)
• Summary of principles agreed at the International Strategy Meeting on Human Genome Sequencing February 1996
• Taxonomy Database Browser from NCBI
• TIGR databases The Institute for Genomic Research
• Unwinding DNA: Life at Cold Spring Harbor Laboratory
• Wellcome Trust: The Human Genome

Progress In Genome Projects

• Animal Genome Size Database
• Completely Sequenced Genomes Rockefeller University
• DOGS - Database Of Genome Sizes Comprehensive list of estimated genome sizes for different organisms
• Entrez Genome: NCBI Squenced and unfinished genomes, including viruses, bacteria, archaea, and eukaryotes.
• Genes and Genetic Diseases by Chromosome Data Reports and Statistics
• GOLD[TM] Genomes OnLine Database monitors genome sequencing projects
• Human Genome Project History
• Human Genome Project Working Draft
• Nature April 2003 Genome Issue
• Nature article "First set of bacterial proteins mapped"
• Nature Genetics: A Ten-Year Retrospective 1992-2002
• Nature web focus: The Human Genome
• Nature's Omics Gateway
• Quick Guide to Sequenced Genomes Sequenced genome projects from the Genome News Network.
• Science April 2003 Genome Issue: Building on the DNA Revolution
• Science Article: "Realizing the Potential of the Genome Revolution: The Genomes to Life Program," Marvin E. Frazier, Gary M. Johnson, David G. Thomassen, Carl E. Oliver, and Aristides Patrinos, Science 300, 290 (2003)
• Science Article: "The Human Genome Project: Lessons from Large-Scale Biology," Francis S. Collins, Michael Morgan, Aristides Patrinos, Science 300, 286 (2003)
• Science February 2001 Genome Issue
• Science October 1996 Genome Issue
• Science October 1997 Genome Issue
• Science October 1998 Genome Issue
• Science October 1999 Genome Issue
• Science October 2001 Genome Issue
• Wellcome Trust: The Human Genome

Genetics and Life Sciences

• 1997 DOE BER Exceptional Service Awards
• About.com Biology
• American Association for the Advancement of Science
• American Institute of Biological Sciences
• American Society for Microbiology represents 23 disciplines of microbiological specialization plus a division for microbiology educators
• BioNetbook directory of Web pages for Biology
• Biosciences Library Electronic information system of libraries as a tool for studies and research.
• CDC Office of Genomics and Disease Prevention
• Cell and Molecular Biology Online Collection of links for students and biologists
• Convention on Biological Diversity
• Genes 2000 Online version of Genes general life sciences resource
• Genetic Response to Global Warming North American red squirrels exhibit genetic changes in response to a warming climate
• GenomeBiology devoted to biology in the post-genomic era
• HHMI Holiday Lectures on Science
• HUM-MOLGEN - Communication forum in Human Molecular Genetics discussion list, journal previews, meetings, news, and positions in bioscience and medicine
• Internet for the Molecular Biologist
• Joint Institute for Biological Sciences Life Sciences Division, Oak Ridge National Laboratory
• Life Sciences Division Oak Ridge National Laboratory
• Mammalian Genetics and Development Section, ORNL
• Medical Research Council (U.K.)
• Medicine WWW Virtual Library
• Microbiology Jump Station collection of links for microbiologists
• Molecular Biology Directory
• Molecular Biology Jump Station collection of links for biologists
• Molecular Genetics Jump Station collection of links for genetics
• National Library of Medicine
• National Science Foundation
• Nature Genetics: A Ten-Year Retrospective 1992-2002
• PhyloCode formal set of rules governing phylogenetic nomenclature
• Portal on Biology in Spanish
• Proteomics Glossaries and Taxonomies Evolving terminology for emerging technologies from Cambridge Healthtech Institute.
• Scientific Discovery through Advanced Computing
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
• WWW Virtual Library: Biochemistry and Cell Biology
• WWW Virtual Library: Biosciences searchable index
• WWW Virtual Library: Developmental Biology
• WWW Virtual Library: Model Organisms

Protein Research

• Addgene Plasmid Repository for Life Sciences non-profit organization promoting sharing of plasmid constructs
• Article "Meeting halfway on the bridge between folding theory and experiment," Vijay S. Pande, PNAS April 1, 2003 (pdf)
• Article: "Microsecond electrophoresis," Matthew L. Plenert and Jason B. Shear, PNAS January 2003 (pdf)
• Biozon a unified biological resource on DNA sequences, proteins, complexes and cellular pathways.
• Bloomsbury Centre for Structure Biology
• BoLA Nomenclature Committee information source on the bovine major histocompatibility complex - its genes, proteins and polymorphism.
• BRITE database of binary relations for computation and graph comparisons
• BSM SearchLauncher: Protein secondary structure prediction
• Cambridge Crystallographic Data Center
• CATH: Protein Structure Classification
• Center for Eukaryotic Structural Genomics 3-D structure of proteins encoded by Arabidopsis thaliana
• Comparative and Functional Genomics
• Computational Biosciences protein and DNA sequence analysis and annotation
• CPRMap - Clinical Proteomics Research Map
• Cytokines Online Pathfinder Encyclopaedia (COPE)
• DBSubLoc database of protein subcellular localization
• DOE Genomes to Life Contractor-Grantee Workshop I (2003)
• DOE Genomics:GTL Contractor-Grantee Workshop II (2004)
• EBI Macromolecular Structure Database European project for the collection, management and distribution of data about macromolecular structures, derived in part from the Protein Data Bank (PDB).
• Encyclopedia of Life (EOL) collaborative global project designed to catalog the complete proteome of every living species in a flexible reference system.
• European Bioinformatics Institute (EBI) European Molecular Biology Laboratory (EMBL) research center that manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures.
• ExPASy - Swiss-Prot and TrEMBL protein sequence database and the computer-annotated supplement
• ExPASy Molecular Biology Server (SWISS-PROT, etc.) EBI server dedicated to the analysis of protein sequences and structure as well as 2-D PAGE
• http://folding.stanford.edu/ distributed computing project which studies protein folding, misfolding, aggregation, and related diseases
• Functional Genomics Jump Station
• GeneCards Database human genes, products, and involvement in disease
• GeneParser identification of protein coding regions
• Human Mitochondrial Protein Database
• Human Proteome Organisation International group formed to further the understanding of human proteins and to realize the benefits of proteomics by encouraging cooperation among scientific, governmental, and financial communities.
• Human Proteomics Initiative (HPI) Project to annotate all known human sequences to the quality standards of Swiss-Prot, including information on each known protein.
• IMB Jena Image Library of Biological Macromolecules
• iProClass family relationships and structural/functional features of proteins
• Max-Planck-Institute for Experimental Medicine: Biological Databases Genetic, Protein, and Structure Databases; Modeling; FTP Entries; and Complete Genomes
• MetaCyc: Metabolic Pathway Database describes metabolic pathways, reactions, enzymes, and substrate compounds from multiple organisms
• Mitochondria Project Database for mitochondria-related genes, proteins and diseases
• Molecular Station Molecular biology protocols, bioinformatics
• NHGRI Homeodomain Resource non-redundant protein sequences, 3D structures, and genomic information
• NNPREDICT server Prediction of protein sequence secondary structure
• Nucleic Acid Database (NDB) Project goal is to assemble and distribute structural information about nucleic acids
• PairCoil predicts coiled-coil domains in protein sequences
• PDBSum: Summaries and Structural analysis of PDB data files
• PEDANT: Protein Extraction, Description, and ANalysis Tool
• Peptaibol Database Crystallography Department, Birkbeck College, London
• Pfam - Protein families database of alignments and HMMs protein families database of alignments and HMMs
• PRINTS Protein Sequence Motif Database
• probeBase database of published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information
• PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit)
• Protein Data Bank (PDB) Repository for 3-D macromolecular structure data
• Protein Science a publication of the Protein Society
• Protein Structure Group, Computational Biosciences exploring protein threading, ab initio folding, and classification
• Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics
• Protein Structure Prediction Center
• Proteomics Standards Initiative Aims to define community standards for data representation in proteomics to facilitate data comparison, exchange, and verification.
• ProtoMap+ hierarchical classification of all SWISSPROT and TrEMBL proteins
• ProtoNet offers automatic hierarchical classification of proteins
• proWeb Project protein family documentation
• REBASE[R]: Restriction Enzyme Database information about restriction enzymes and related proteins
• SBASE: A Protein Domain Library
• SearchLauncher provides a single point of entry for related WWW search and analysis services
• Secondary structure assignment database (DSSP) program for DSSP database
• SignalP predicts signal peptides cleavage sites in amino acid sequences
• SRPDB (Signal Recognition Particle Database)
• Structural Classification of Proteins database of structural and evolutionary relationships among proteins
• Swiss Proteomics Society Organization to promote research and education in the science of proteomics in Switzerland and other countries.
• SWISS-MODEL Automated Comparative Protein Modelling Server
• Swiss-Prot Annotated database of protein amino acid sequences.
• Systems Biology Pacific Northwest National Laboratory (PNNL)
• Teresa Head-Gordon Group; Department of Bioengineering; University of California, Berkeley protein folding and structure prediction and modeling aqueous hydration
• The Molecules of Life Simple interactive introduction to laboratory techniques used to understand the structure of protein molecules. For general audiences.
• The Proteome Society Organization to provide worldwide opportunities regarding protein study for education, networking, and information exchange among scientists.
• Transcription Regulatory Regions Database
• UMBER: University of Manchester Bioinformatics Education and Research accesses protein sequence and structure databases
• UniProt (Universal Protein Resource) comprehensive catalog of information on proteins

Proteomics

• 123Genomics Genomics, Proteomics and Bioinformatics Knowledge Base
• ABIM Organism Databases links to many different databases
• Article "Meeting halfway on the bridge between folding theory and experiment," Vijay S. Pande, PNAS April 1, 2003 (pdf)
• BIATECH: Biology - Integration - Analysis - Technology - Environment - Computation - Health independent nonprofit biomedical research center
• Biological Biochemical Image Database searchable database of images of putative biological pathways, macromolecular structures, gene families, and cellular relationships
• Briefings in Functional Genomics and Proteomics Journal
• Brutlag Bioinformatics Group located in the Biochemistry Department at Stanford University and affiliated with the Stanford Medical Informatics program
• Cytokines Online Pathfinder Encyclopaedia (COPE)
• Encyclopedia of Life (EOL) collaborative global project designed to catalog the complete proteome of every living species in a flexible reference system.
• http://folding.stanford.edu/ distributed computing project which studies protein folding, misfolding, aggregation, and related diseases
• Genomics and Bioinformatics Center, Chinese Academy of Sciences
• Human Mitochondrial Protein Database
• Human Proteome Organisation International group formed to further the understanding of human proteins and to realize the benefits of proteomics by encouraging cooperation among scientific, governmental, and financial communities.
• Human Proteomics Initiative (HPI) Project to annotate all known human sequences to the quality standards of Swiss-Prot, including information on each known protein.
• Munich Information Center for Protein Sequences (Mips)
• Pharmacogenomics Online News, events, publications and suppliers
• probeBase database of published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information
• Prostate Expression Database
• Protein Information Resource A Division of National Biomedical Research Foundation
• Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics
• Proteomics from Google
• Proteomics Standards Initiative Aims to define community standards for data representation in proteomics to facilitate data comparison, exchange, and verification.
• Proteomics World
• ProtoMap+ hierarchical classification of all SWISSPROT and TrEMBL proteins
• proWeb Project protein family documentation
• REBASE[R]: Restriction Enzyme Database information about restriction enzymes and related proteins
• SBASE: A Protein Domain Library
• Swiss Proteomics Society Organization to promote research and education in the science of proteomics in Switzerland and other countries.
• Swiss-Prot Annotated database of protein amino acid sequences.
• Systems Biology Pacific Northwest National Laboratory (PNNL)
• The Proteome Society Organization to provide worldwide opportunities regarding protein study for education, networking, and information exchange among scientists.

Models

• Caltech List of Model Organism Databases
• Comprehensive Microbial Resource from TIGR
• DEAMBULLUM Genomes and Organisms
• Dog Genome Project
• Entrez Structure (MMDB: Molecular Modelling Database) Three-D macromolecular structure data.
• euGenes: Genomic Information for Eukaryotic Organisms
• European Mouse Mutant Archive (EMMA) repository for collection, archiving (via cryopreservation) and distribution of mutant strains
• Gene Expression Nervous System Atlas (GENSAT) brain slice images of BAC transgenic mice
• Generic Model Organism Database Project
• Human to Mouse Homology Map
• International Mammalian Genome Society
• Jackson Laboratory
• Mammalian Genetics and Development Section, ORNL
• Model Organisms for Biomedical Research National Institutes of Health
• Mouse Atlas and Gene Expression Database Project
• Mouse BAC Sequencing Program Program to Sequence Regions of Mouse DNA of High Biomedical Importance
• Mouse Genome Centre Mammalian Genetics Unit, UK
• Mouse Genome Informatics at Jackson Laboratory includes Mouse Genome Database (MGD) and Encyclopedia of the Mouse Genome
• NC3Rs - National Centre for the Replacement, Refinement and Reduction of Animals in Research
• NIH Plan for Mouse Genomics and Genetics Resources
• References for Gene Knockouts in Mice that Affect Nervous System Phenotypes and Function (mailing list)
• Report of a 1998 NIH Workshop on Model Organism Databases
• Tennessee Mouse Genome Consortium
• Transgenic Animal Web
• Transgenic Animal Web Links to Useful Resources
• U.S. Dept. of Energy Microbial Cell Project
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
• WWW Virtual Library: Model Organisms

Transgenic

• A Practical Guide to Containment: Greenhouse Research with Transgenic Plants and Microbes
• Gene Expression Nervous System Atlas (GENSAT) brain slice images of BAC transgenic mice
• Homophila human disease to drosophila gene database: uses OMIM to determine if sequence homologs exist in FlyBase using BLAST
• Nucleics custom-made transgenic mice models
• Transgenic Animal Web
• Transgenic Animal Web Links to Useful Resources
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research

Homology

• Database of Human Disease Causing Gene Homologues in Dictyostelium Discoideum
• Homophila human disease to drosophila gene database: uses OMIM to determine if sequence homologs exist in FlyBase using BLAST
• Human to Mouse Homology Map
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research

Research Sites

• Australian Genome Research Facility
• Australian National Genomic Information Server
• Baylor College of Medicine Human Genome Center
• Biotechnology Research Information part of the Netherlands Institute for Scientific Information Services
• Broad Institute fulfulling the promise of genetics for medicine
• Brown Lab, Stanford University, California
• Caltech Genome Research Laboratory BAC library resources, physical mapping, building framework BAC-EST map, and sequencing Pyrobaculum aerophilum.
• Canadian Genetic Diseases Network consortium of genetic scientists and core technology facilities
• Cancer Genome Anatomy Project interdisciplinary program to establish the information and technological tools needed to decipher the molecular anatomy of a cancer cell
• Centre d'Etude du Polymorphisme Humain
• Cold Spring Harbor Laboratory
• Cold Spring Harbor Laboratory Human Genome Sequencing
• Cooperative Human Linkage Center (CHLC)
• Department of Genome Analysis, GBF
• DKFZ (German Cancer Research Center) - Heidelberg, Germany in German
• DNA Sequence and Technology Center Stanford University
• DOE and NIH Research Sites
• DOE National Laboratories and User Facilities
• EBI Research and Services Groups
• Eccles Institute of Human Genetics University of Utah
• Eleanor Roosevelt Institute at the University of Denver
• European Molecular Biology Laboratory
• Généthon
• GenLink database for human genetics and telomere research
• GenLink Human Chromosome-Specific Sites
• Genome Canada
• Genome Information Research Center Osaka University
• Genome Sequencing Centre Jena
• GenomeNet
• Genoscope
• German Human Genome Project
• German Human Genome Project Resource Center and Primary Database
• Howard Hughes Medical Institute major U.S. philanthropic organization that supports research in genetics, cell biology, immunology, structural biology, and neuroscience.
• Human Genome Organisation (HUGO)
• Human Genome Project Research in Progress
• Institute for Genomic Research (TIGR)
• Institute of Genetics Supports research on the genetic and biochemical basis of health and disease
• Japan Science and Technology Corporation ( JST ) Advanced Lifescience Information System ( ALIS )
• Joint Genome Institute Department of Energy sequencing institution
• Kazusa DNA Research Institute
• Korea Research Institute of Bioscience and Biotechnology (KRIBB)
• Lawrence Livermore National Laboratory Biology & Biotechnology Research Program
• Lawrence Livermore National Laboratory Genome Center
• M.D. Anderson Cancer Center, Department of Molecular Genetics
• Mammalian Genoytping Service (MGS)
• Max Planck Institute of Molecular Genetics
• Merck Genome Research Institute Gene function studies
• MITOMAP A human mitochondrial genome database
• Molecular Genetics Labs Cedars-Sinai Medical Center data on human chromosomes 11 and 21, BAC-STS map, mouse data
• National Center for Genome Resources
• National Institutes of Health National Human Genome Research Institute
• National Laboratory for the Genetics of Israeli Populations national repository for human cell lines
• NIH Center for Molecular Modeling 3-D structure and physiochemical properties
• Oklahoma University
• Pittsburgh Supercomputing Center Biomedical Supercomputing Initiative
• Queen's University Forsdyke Laboratory of Molecular Biology and Bioinformatics
• Roslin Institute Online mission is to understand and improve the productivity, breeding, and welfare of farm animals
• Sandia National Laboratories, California
• Sanger Center a genome research centre set up by the Wellcome Trust
• Stanford Genomic Resources
• Stanford Human Genome Center
• TelDB: GenLink Multimedia Telomere Resource
• Telethon Institute for Genetics and Medicine
• University of California, Irvine
• University of Michigan Sequencing Core
• University of Oklahoma Advanced Center for Genome Technology
• University of Pennsylvania Center for Bioinformatics
• University of Victoria, Biology Department
• University of Washington Genome Center
• Utah Genome Center Projects at the center encompass large-scale sequencing, capillary, genotyping, and ELSI.
• Washington University Genome Sequencing Center
• WEHI (Walter and Eliza Hall Institute of Medical Research) - Melbourne, Australia
• Wellcome Trust
• World Health Organization: Genetic techniques

Bioinformatics

• 123Genomics Genomics, Proteomics and Bioinformatics Knowledge Base
• 1997 Program Report in the DOE Human Genome Project
• 2000 DOE Microbial Genome Report
• 2can Bioinformatics Educational Resource
• ALFRED, ALlele FREquency Database Kidd Lab Frequency Database for releasing frequency data
• Animal Bioinformatics & Research Menu Hubsite
• Bibliography on Computational Gene Recognition
• Bielefeld University Bioinformatics Server
• BioBrew Linux open source Linux distribution that is enhanced for life scientists
• BioCatalog software directory of general interest in molecular biology and genetics
• BioInform news service focused exclusively on the global bioinformatics community.
• Bioinformatic resources, University of Otago, Dunedin, New Zealand includes Transterm (tools for translational control elements) and Mlogd (detects overlapping genes)
• Bioinformatics full-text of selected papers in 'bioinformatics' or 'genomics' from Donald Forsdyke, Queen's University, Canada
• Bioinformatics 2001 Conference the third major international bioinformatics meeting in Scandinavia organized jointly by groups from the Nordic countries.
• Bioinformatics Directory from Google
• Bioinformatics Journal
• Bioinformatics Law Resources Starting Points for Finding Bioinformatics Law Resources on the Internet
• Bioinformatics Links
• Bioinformatics Research in the Human Genome Project
• BioInformatics Services biotechnology consulting firm
• Bioinformatics.org: The Open Lab provides information on free tools being developed for bioinformatics research.
• Bioinformatik software, tutorials, databases, literature, technologies, jobs, and resources.
• Bioknoppix customized distribution of Knoppix Linux Live CD targeted for molecular biologists
• BioLinux repository of easy-to-install RPM packages for widely used bio-informatics tools
• BioLinux-BR easy-to use Linux system for the scientific community (under development)
• BioMolecular Engineering Research Center and Molecular Biology Computer Research Resource
• Bioperl Project Perl tools for bioinformatics, genomics and life science research
• Biopython Project an international association of developers of Python tools for computational molecular biology
• BioWarehouse  Database Integration for Bioinformatics
• Blueprint cutting-edge research, training and development of bioinformatics products and services.
• BMC Bioinformatics Journal
• Briefings in Bioinformatics provides help and guidance to the non-specialist.
• BRITE database of binary relations for computation and graph comparisons
• Broad Institute fulfulling the promise of genetics for medicine
• Brown Lab, Stanford University, California
• Brutlag Bioinformatics Group located in the Biochemistry Department at Stanford University and affiliated with the Stanford Medical Informatics program
• California Institute for Bioengineering, Biotechnology, and Quantitative Biomedical Research (aka QB3)
• Canadian Bioinformatics Resource Provides access to widely used bioinformatics tools and databases.
• Canadian Bioinformatics Workshops
• Center for Biomolecular Science and Engineering at UC Santa Cruz
• Center for Molecular and Biomolecular Informatics
• Computational Biosciences protein and DNA sequence analysis and annotation
• Database Mining in the Human Genome Initiative white paper
• Database Services at EMBL database searching with SRS
• Department of Genome Analysis, GBF
• DNA Data Bank of Japan
• DNALinux Linux distribution with bioinformatics software pre-installed.
• DOE Genomes to Life Contractor-Grantee Workshop I (2003)
• DOE Genomics:GTL Contractor-Grantee Workshop II (2004)
• EMBnet - European Molecular Biology Network
• Ensembl automatic annotation on eukaryotic genomes
• European Bioinformatics Institute Services (EBI) center for research and services in bioinformatics
• GenBank -- National Center for Biotechnology Information
• Genome Channel Genome annotation and analysis
• Genome Database mapping data
• Genome Sciences Department Lawrence Berkeley National Laboratory
• http://www.stanford.edu/group/pandegroup/genome/ users lend idle computer time to run calculations for research
• Genomics and Bioinformatics Center, Chinese Academy of Sciences
• Genomics Research and Bioinformatics
• Harvard Department of Molecular and Cellular Biology
• Human Genome Organisation HUGO
• ImMunoGeneTics Database (IMGT) nucleotide sequence information for immune system genes
• International Society for Computational Biology dedicated to advancing the scientific understanding of living systems through computation
• Journal of Biomedical Informatics
• KEGG: Kyoto Encyclopedia of Genes and Genomes
• Laboratory for Interdisciplinary Technologies in Bioinformatics (LITBIO) Portal site for bioinformatics
• LAMMPS Molecular Dynamics Simulator
• Lawrence Livermore National Laboratory Biology & Biotechnology Research Program
• Molecular Biological Server computer systems, databases and programs for molecular biology
• Molecular Biology Databases
• Molecular Station Molecular biology protocols, bioinformatics
• Mouse Genome Informatics at Jackson Laboratory includes Mouse Genome Database (MGD) and Encyclopedia of the Mouse Genome
• Munich Information Center for Protein Sequences (Mips)
• National Center for Genome Resources
• National Institutes of Health National Human Genome Research Institute
• NCBI Education tutorials for NCBI's bioinformatics tools
• NIH Center for Molecular Modeling 3-D structure and physiochemical properties
• NIH Funded Grants and Grant History
• Online Journal of Bioinformatics©
• Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
• O'Reilly Science Center books
• Pittsburgh Supercomputing Center Biomedical Supercomputing Initiative
• PRINTS Protein Sequence Motif Database
• Protein Information Resource A Division of National Biomedical Research Foundation
• Protein Structure Group, Computational Biosciences exploring protein threading, ab initio folding, and classification
• Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics
• Proteomics Standards Initiative Aims to define community standards for data representation in proteomics to facilitate data comparison, exchange, and verification.
• Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop IV (1994)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop V (1996)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI (1997)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VIII (2000)
• Research Group in Practical Computer Science
• Roslin Institute Online mission is to understand and improve the productivity, breeding, and welfare of farm animals
• Sanger Center a genome research centre set up by the Wellcome Trust
• Scientific Discovery through Advanced Computing
• Sequence alignment and modeling system
• SignalP predicts signal peptides cleavage sites in amino acid sequences
• Site for Chemical Markup Language XML
• SocBiN -- Society for Bioinformatics in the Nordic countries
• South African National Bioinformatics Institute
• Southwest Biotechnology and Informatics Center (SWBIC) links to biotechnology sites
• Stanford Genomic Resources
• Stein Laboratory develops software for computational biology and genome bioinformatics
• Swiss Institute of Bioinformatics (SIB)
• SWISS-MODEL Automated Comparative Protein Modelling Server
• Syndicated Bioinformatics News
• Telethon Institute for Genetics and Medicine
• TESS: Transcription Element Search System
• U. Minnesota Center for Computational Genomics and Bioinformatics
• U.S. Department of Energy Microbial Genome Program
• U.S. Dept. of Energy Microbial Cell Project
• UCLA Bioinformatics
• University of Pennsylvania Center for Bioinformatics
• University of Pennsylvania's Computational Biology and Informatics Lab
• University of Washington Genome Center
• VigyaanCD electronic workbench for bioinformatics, computational biology and computational chemistry on live Linux CD
• Virginia Tech Bioinformatics Institute
• VLinux Bioinformatics workbench Linux distribution for Bioinformatics
• WEHI (Walter and Eliza Hall Institute of Medical Research) - Melbourne, Australia
• Weizmann Institute of Science: Genome Science and Bioinformatics
• Wellcome Trust
• XOL Ontology Exchange Language XML-based for bioinformatics ontologies

Biocomputing

• AceDB: genome database system
• BioJAVA open-source project dedicated to providing Java tools for processing biological data
• BioLisp: Intelligent applications in BioComputing
• Boulder.pm - A semantic free data interchange format
• California Institute for Bioengineering, Biotechnology, and Quantitative Biomedical Research (aka QB3)
• Center for Biomolecular Science and Engineering at UC Santa Cruz
• Dynamite: code generating language developed for sequence comparison methods
• International Society for Computational Biology dedicated to advancing the scientific understanding of living systems through computation
• Research Group in Practical Computer Science
• Scientific Discovery through Advanced Computing

Computational Biology

• BACTER Institute Bringing Advanced Computational Techniques to Environmental Research (BACTER)
• Bibliography on Computational Gene Recognition
• BioMolecular Engineering Research Center and Molecular Biology Computer Research Resource
• Biopython Project an international association of developers of Python tools for computational molecular biology
• Broad Institute fulfulling the promise of genetics for medicine
• Computational Biochemistry Research Group
• Computational Biosciences protein and DNA sequence analysis and annotation
• Genome Sciences Department Lawrence Berkeley National Laboratory
• Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
• International Society for Computational Biology dedicated to advancing the scientific understanding of living systems through computation
• LAMMPS Molecular Dynamics Simulator
• Pittsburgh Supercomputing Center Biomedical Supercomputing Initiative
• Scientific Discovery through Advanced Computing
• Stein Laboratory develops software for computational biology and genome bioinformatics
• U. Minnesota Center for Computational Genomics and Bioinformatics
• University of Pennsylvania's Computational Biology and Informatics Lab

Comparative Genomics

• ABIM Organism Databases links to many different databases
• American Museum of Natural History Institute for Comparative Genomics
• Genomics and the Future of Health and Society proceedings of the National Academies Institute of Medicine Annual Meeting 2002
• Human Genome Variation Society to foster discovery and characterization of genomic variations including population distribution and phenotypic associations
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research

Structural Genomics

• Entrez Structure (MMDB: Molecular Modelling Database) Three-D macromolecular structure data.
• European Bioinformatics Institute (EBI) European Molecular Biology Laboratory (EMBL) research center that manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures.
• Gene Regulation
• Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics

Functional Genomics

• BIATECH: Biology - Integration - Analysis - Technology - Environment - Computation - Health independent nonprofit biomedical research center
• Biological Biochemical Image Database searchable database of images of putative biological pathways, macromolecular structures, gene families, and cellular relationships
• Briefings in Functional Genomics and Proteomics Journal
• Cancer Genome Project
• Comparative and Functional Genomics
• DOE Genomes to Life Contractor-Grantee Workshop I (2003)
• DOE Genomics:GTL Contractor-Grantee Workshop II (2004)
• Functional Genomics
• Functional Genomics Jump Station
• Genomics:GTL Program from the U.S. Department of Energy The next step at the Department of Energy to accelerate understanding of dynamic living systems
• Homeobox gene-classification issues and information
• Human Genome Variation Society to foster discovery and characterization of genomic variations including population distribution and phenotypic associations
• HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism
• Korea Research Institute of Bioscience and Biotechnology (KRIBB)
• Merck Genome Research Institute Gene function studies
• MetaCyc: Metabolic Pathway Database describes metabolic pathways, reactions, enzymes, and substrate compounds from multiple organisms
• Microarray Facility, Albert Einstein College of Medicine of Yeshiva University
• Minimal Genome Project
• Mouse Atlas and Gene Expression Database Project
• Mouse Gene Index The Institute for Genomic Research
• Mutations in the Human Genome Proceedings of a meeting held in Italy, May 13 - 16, 1999
• Myc Cancer Gene collection of resources
• NIH Plan for Mouse Genomics and Genetics Resources
• Ovarian Kaleidoscope Database biological function, expression pattern and regulation of genes expressed in the ovary
• Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
• Science Magazine: Functional Genomics
• Systems Biology Pacific Northwest National Laboratory (PNNL)
• Transcription Regulatory Regions Database
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
• von Arnim Lab at University of Tennessee
• X-Chromosome Dosage Compensation

Population Genetics

• Genographic Project from National Geographic and IBM; explores early human migration and deep ancestry via genetic markers that indicate haplogroups
• Genomics and Disease Prevention
• International Genetic Epidemiology Society (IGES) the study of genetic components in complex biological phenomena

Evolutionary Genomics

• Evolutionary Genomics NASA Astrobiology Institute, Evolutionary Genomics Focus Group
• Genetic Response to Global Warming North American red squirrels exhibit genetic changes in response to a warming climate
• PALAEOS: The Trace of Life on Earth

Microarray

• ABIM Organism Databases links to many different databases
• BioChipNet microarrays and related fields
• DNA Chips from Science NetLinks lesson plan (grades 9-12) exploring DNA microarray technology
• DNA Microarray (Genome Chip) basics on DNA microarray technology and a list of links
• DNA Microarrays Resource Introduction to technology; resource for software, protocols, literature and labs
• DOE Genomes to Life Contractor-Grantee Workshop I (2003)
• DOE Genomics:GTL Contractor-Grantee Workshop II (2004)
• Electronic Library of Microarray Publications
• Microarray Facility, Albert Einstein College of Medicine of Yeshiva University
• Microarray Gene Expression Data (MGED) Society Goals are to establish standards for data annotation and exchange, facilitate creation of databases and software implementing standards, and promot data sharing
• Mouse Retina Developmental Gene Expression
• Oncogenomics Normal Tissue Database high-density gene expression database derived from 42,000 clone cDNA microarrays containing 18,927 unique genes for 158 normal human samples from 19 different organs of 30 different individuals
• probeBase database of published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information
• Real Time PCR Primer Sets Database of validated primer sets for quantitative real time PCR
• Snapshots of Science & Medicine NIH Office of Science Education Site

RNA

• EMBL Nucleotide Sequence Database Europe's primary DNA and RNA sequence resource.
• Promega supplier of biological reagents and reagent systems used in research and applied technology applications
• Ribosomal Database Project
• SRPDB (Signal Recognition Particle Database)
• tmRNA Website bacterial tmRNA

Transcriptomics

• Prostate Expression Database

SNP

• dbSNP from NCBI
• Dog Genome Sequencing Project at Broad Institute
• GeneSNPs Public Internet Resource
• Human Genome Variation Society aims to foster discovery and characterization of genomic variations
• Real Time PCR Primer Sets Database of validated primer sets for quantitative real time PCR
• SNP Consortium Database Single Nucleotide Polymorphisms for Biomedical Research
• SNP500Cancer provides a central resource for sequence verification of SNPs
• SNPs

Genes

• 1998 Gene Map
• 1999 Gene Map
• Ask the Geneticist Answers questions about genetic concepts, and the etiology, treatment, research, testing, and predisposition to genetic disorders.
• Asthma & Allergy Gene Database
• Atlas of Genetics and Cytogenetics in Oncology and Haematology reviews on genes, cytogenetic and clinical entities in cancer, and on cancer-prone diseases; also a portal to databases devoted to genomics and/or cancer
• Beckwith-Wiedemann Support Group
• Behavioral Genetics
• Blazing a Genetic Trail illustrated booklet on hunting for disease genes.
• Breast Cancer Mutation Data Base Open Access On-Line Breast Cancer Mutation Data Base
• BTKBase mutation registry for X-Linked agammaglobulinemia
• Cancer Genome Anatomy Project interdisciplinary program to establish the information and technological tools needed to decipher the molecular anatomy of a cancer cell
• Cardiff Human Gene Mutation Database (HGMD) Provides practical diagnostic information to researchers, diagnosticians, physicians, and genetic counselors
• Chromosome Chooser Maps of all human chromosomes with a list of disease genes found on each.
• Congenital Diaphragmatic Hernia Research Advocacy and Support
• Consensus Statement "Genetic Testing for Cystic Fibrosis" National Institutes of Health
• Cystic Fibrosis Mutation Data Base Compiled with information collected by the Cystic Fibrosis Genetic Analysis Consortium
• Diabetes Insipidus Foundation
• Environmental Genome Project
• EPConDB information about pancreatic genes
• European Directory of DNA Laboratories (EDDNAL) intended mainly for clinical geneticists and molecular biologists. Contact names and addresses for DNA laboratories and details services on genetic diseases
• Gene Ontology Consortium
• GeneCards Database human genes, products, and involvement in disease
• Generic Model Organism Database Project
• Genes and Genomes Issue The Scientist VOLUME 13, No:15 July 19, 1999
• GeneTests:? medical genetics information resource GeneReviews publication, directory of genetic testing laboratories and diagnosis clinics, and educational materials
• Généthon
• Genetic Alliance non-profit organization dedicated to helping individuals and families who have genetic disorders
• Genetic Disease Information
• Genetic Disorders and Birth Defects - Sri Lanka Collection makes available information about genetic disorders and birth defects most relevant to Sri Lanka
• Genetic Support Groups Directory
• Genetics Home Reference consumer information about genetic conditions and the genes responsible
• GLIMMER a system for finding genes in microbial DNA
• Homeobox gene-classification issues and information
• Human Chromosome Launchpad Links to Research Resources by Chromosome
• Human Genome Variation Society aims to foster discovery and characterization of genomic variations
• Human to Mouse Homology Map
• HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism
• ImMunoGeneTics Database (IMGT) nucleotide sequence information for immune system genes
• Institute for Genomic Research (TIGR)
• JCRB Gene Bank
• March of Dimes Birth Defects Information
• Max-Planck-Institute for Experimental Medicine: Biological Databases Genetic, Protein, and Structure Databases; Modeling; FTP Entries; and Complete Genomes
• Mitochondria Project Database for mitochondria-related genes, proteins and diseases
• Molecular Probe Data Base
• Mountain States Regional Genetic Services Network
• Myc Cancer Gene collection of resources
• National Laboratory for the Genetics of Israeli Populations national repository for human cell lines
• National Organization for Rare Disorders NORD, a nonprofit organization, serves as an international clearinghouse of information on over 5,000 rare disorders
• Nomenclature Committee (HUGO) database of and guidelines for gene symbols and names, related publications
• Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
• Phenylalanine Hydroxylase Locus Database
• PROCRUSTES: Gene Recognition via Spliced Alignment
• RIKEN Bioresource Center DNA Bank cultured animal and plant cell lines, DNA from Tsukuba, Japan
• SERGG: SouthEastern Regional Genetics Group
• Society for the Study of Inborn Errors of Metabolism The aims of the Society are to foster the study of inherited metabolic disorders and related topics
• Support Organization for Trisomy 18, 13 and Other Chromosome Disorders
• TIGR databases The Institute for Genomic Research
• UniGene automatically partitions GenBank sequences into non-redundant set of gene-oriented clusters
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
• Vysis: Genomic Disease Management develops, commercializes and markets clinical products
• World Health Organization: Genetic techniques
• X-Chromosome Dosage Compensation
• Yahoo's Disabilities List
• Yahoo's Diseases and Conditions List

DNA Structure

• DNA Structure Tutorial

Mapping

• 1997 Program Report in the DOE Human Genome Project
• 1998 Gene Map
• 1999 Gene Map
• 2000 DOE Microbial Genome Report
• Caltech Genome Research Laboratory BAC library resources, physical mapping, building framework BAC-EST map, and sequencing Pyrobaculum aerophilum.
• Centre d'Etude du Polymorphisme Humain
• Cooperative Human Linkage Center (CHLC)
• Department of Genome Analysis, GBF
• DOE and NIH Research Sites
• Exceptional Chromosome Regions II Meeting
• GenAtlas gene, marker, phenotype database
• Gene Mapping Laboratory of Immunogenetics at University of Illinois
• GeneCards Database human genes, products, and involvement in disease
• Généthon
• Genetic and Physical Maps of the Mouse Genome Whitehead-MIT
• Genetic Linkage Analysis
• GenLink database for human genetics and telomere research
• Genome Channel Genome annotation and analysis
• Genome Database mapping data
• HUGO Chromosomes Mitochondrion lists mitochondrial
• HUGO-GDB Chromosome Editors
• Human Chromosome Launchpad Links to Research Resources by Chromosome
• Human Chromosome Workshops GenLink
• Human Genome Center
• Human Genome Organisation HUGO
• Human to Mouse Homology Map
• IMAGE Consortium Integrated Molecular Analysis of Genomes and their Expression
• Lawrence Livermore National Laboratory Genome Center
• Mammalian Genoytping Service (MGS)
• Mapping Research in the Human Genome Project
• MITOMAP A human mitochondrial genome database
• Model Organisms for Biomedical Research National Institutes of Health
• Molecular Genetics Labs Cedars-Sinai Medical Center data on human chromosomes 11 and 21, BAC-STS map, mouse data
• Molecular Probe Data Base
• National Institutes of Health National Human Genome Research Institute
• NIH Funded Grants and Grant History
• Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
• Premier Biosoft International Primer design and vector mapping software
• PROCRUSTES: Gene Recognition via Spliced Alignment
• Radiation Hybrid Database
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop IV (1994)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop V (1996)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI (1997)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VIII (2000)
• RIKEN Genomic Sciences Center
• Roslin Institute Online mission is to understand and improve the productivity, breeding, and welfare of farm animals
• Telethon Institute for Genetics and Medicine
• U.S. Department of Energy Microbial Genome Program
• U.S. Dept. of Energy Microbial Cell Project
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research

BACs

• BAC/PAC and YAC collection Resources for Molecular Cytogenetics
• BACs (Bacteria Artificial Chromosomes)
• Bacterial Artificial Chromosomes (BACs) Citations up to 1995
• Caltech Genome Research Laboratory BAC library resources, physical mapping, building framework BAC-EST map, and sequencing Pyrobaculum aerophilum.
• Children's Hospital Oakland Research Institute BAC and PAC genomic DNA libraries; high density colony hybridization filters, BAC/PAC cloning vectors, laboratory staff, and recent publications
• Eccles Institute of Human Genetics University of Utah
• FISH-mapped BACs (CCAP) Cancer Gene Anatomy Project
• Gene Expression Nervous System Atlas (GENSAT) brain slice images of BAC transgenic mice
• Molecular Genetics Labs Cedars-Sinai Medical Center data on human chromosomes 11 and 21, BAC-STS map, mouse data
• National Institutes of Health Bacterial Artificial Chromosome (BAC) Resource Network

Sequencing

• 1997 Program Report in the DOE Human Genome Project
• 2000 DOE Microbial Genome Report
• Baylor College of Medicine Human Genome Center
• BLAST NCBI's sequence similarity search tool supports analysis of nucleotide and protein databases.
• Broad Institute fulfulling the promise of genetics for medicine
• Caltech Genome Research Laboratory BAC library resources, physical mapping, building framework BAC-EST map, and sequencing Pyrobaculum aerophilum.
• CELERA
• Completely Sequenced Genomes Rockefeller University
• Computational Biosciences protein and DNA sequence analysis and annotation
• dbEST Expressed Sequence Tags from a number of organisms.
• DDBJ - DNA Data Bank of Japan (National Institute of Genetics)
• DKFZ (German Cancer Research Center) - Heidelberg, Germany in German
• DNA Sequence and Technology Center Stanford University
• DOE and NIH Research Sites
• DOE Genomes to Life Contractor-Grantee Workshop I (2003)
• DOE Genomics:GTL Contractor-Grantee Workshop II (2004)
• Eccles Institute of Human Genetics University of Utah
• EMBL Nucleotide Sequence Database Europe's primary DNA and RNA sequence resource.
• Exceptional Chromosome Regions II Meeting
• ExPASy Molecular Biology Server (SWISS-PROT, etc.) EBI server dedicated to the analysis of protein sequences and structure as well as 2-D PAGE
• Gene Codes Corporation Makers of the Sequencher sequence analysis program
• GeneParser identification of protein coding regions
• Genome Analysis Pipeline submit sequences via web interface for comprehensive analysis
• Genome Channel Genome annotation and analysis
• Genome Sequencing Centre Jena
• Genomics and Bioinformatics Center, Chinese Academy of Sciences
• Genoscope
• GOLD[TM] Genomes OnLine Database monitors genome sequencing projects
• GRAIL: Gene Recognition and Assembly Internet Link sequencing analysis
• HGVbase (Human Genome Variation database) lists human intra-genic (promoter to transcription end point) DNA sequence polymorphisms.
• HUGO Chromosomes Mitochondrion lists mitochondrial
• Human Chromosome 22: First to be Decoded news release
• Human Chromosome Launchpad Links to Research Resources by Chromosome
• Human Genome Center
• Human Genome Organisation HUGO
• Human Genome Project Progress
• Human Genome Project Working Draft
• Human Genome Project Working Draft Sequence
• IMAGE Consortium Integrated Molecular Analysis of Genomes and their Expression
• ImMunoGeneTics Database (IMGT) nucleotide sequence information for immune system genes
• Institute for Genomic Research (TIGR)
• Japan Science and Technology Corporation ( JST ) Advanced Lifescience Information System ( ALIS )
• JCRB Gene Bank
• Joint Genome Institute Department of Energy sequencing institution
• Kazusa DNA Research Institute
• Lawrence Livermore National Laboratory Genome Center
• MAFF DNA Bank Rice and animal genome projects
• Model Organisms for Biomedical Research National Institutes of Health
• National Institutes of Health National Human Genome Research Institute
• NCBI Reference Sequences
• NIH Funded Grants and Grant History
• NIH Genome Sequencing Proposals (2005)
• Nomenclature Committee (HUGO) database of and guidelines for gene symbols and names, related publications
• Nucleic Acid Database (NDB) and Structure Finder
• Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
• PairCoil predicts coiled-coil domains in protein sequences
• PBIL allows browsing through numerous databases and access to many tools for nucleotide or protein sequence analysis
• Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop IV (1994)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop V (1996)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI (1997)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VII (1999)
• Research Abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VIII (2000)
• Ribosomal Database Project
• RIKEN Bioresource Center DNA Bank cultured animal and plant cell lines, DNA from Tsukuba, Japan
• RIKEN Genomic Sciences Center
• Sanger Centre Sequencing
• SearchLauncher provides a single point of entry for related WWW search and analysis services
• Seq-Gen: Sequence-Generator application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
• Sequencing Facts
• Sequencing Research in the Human Genome Project
• SignalP predicts signal peptides cleavage sites in amino acid sequences
• SNPs
• Stanford Human Genome Center
• Summary of principles agreed at the International Strategy Meeting on Human Genome Sequencing February 1996
• TelDB: GenLink Multimedia Telomere Resource
• Telethon Institute for Genetics and Medicine
• TIGR databases The Institute for Genomic Research
• Trace Archive from NCBI a repository of the raw sequence traces generated by large sequencing projects
• U.S. Department of Energy Microbial Genome Program
• U.S. Dept. of Energy Microbial Cell Project
• UMBER: University of Manchester Bioinformatics Education and Research accesses protein sequence and structure databases
• University of Michigan Sequencing Core
• University of Oklahoma Advanced Center for Genome Technology
• University of Washington Genome Center
• Vertebrate Genome Annotation (VEGA) a central repository for manual annotation of different vertebrate finished genome sequence
• Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
• Washington University Genome Sequencing Center

cDNA

• HGSC Sequencing Projects, Baylor College of Medicine

Professional Societies

• American Association for the Advancement of Science
• American Crystallographic Association
• American Hemochromatosis Society (AHS)
• American Institute of Biological Sciences
• American Society for Histocompatibility and Immunogenetics (ASHI)
• American Society for Human Genetics
• American Society for Microbiology represents 23 disciplines of microbiological specialization plus a division for microbiology educators
• American Society of Gene Therapy
• American Society of Law, Medicine, and Ethics
• Association of Professors of Human or Medical Genetics
• European Federation of Biophysics
• Genetics Societies
• Genetics Society of America
• Human Genome Variation Society aims to foster discovery and characterization of genomic variations
• Institute of Genetics Supports research on the genetic and biochemical basis of health and disease
• International Behavioural and Neural Genetics Society
• International Federation of Human Genetic Societies
• International Genetic Epidemiology Society (IGES) the study of genetic components in complex biological phenomena
• International Mammalian Genome Society
• International Society for Computational Biology dedicated to advancing the scientific understanding of living systems through computation
• International Society of Nurses in Genetics (ISONG)
• Life Sciences Society
• Research Databases
• • Atlas of Genetics and Cytogenetics in Oncology and Haematology reviews on genes, cytogenetic and clinical entities in cancer, and on cancer-prone diseases; also a portal to databases devoted to genomics and/or cancer
  • Breast Cancer Mutation Data Base Open Access On-Line Breast Cancer Mutation Data Base
  • BRITE database of binary relations for computation and graph comparisons
  • BTKBase mutation registry for X-Linked agammaglobulinemia
  • Cardiff Human Gene Mutation Database (HGMD) Provides practical diagnostic information to researchers, diagnosticians, physicians, and genetic counselors
  • Computational Biosciences protein and DNA sequence analysis and annotation
  • Cystic Fibrosis Mutation Data Base Compiled with information collected by the Cystic Fibrosis Genetic Analysis Consortium
  • Database Services at EMBL database searching with SRS
  • DBCAT, The Public Catalog of Databases
  • dbEST Expressed Sequence Tags from a number of organisms.
  • DDBJ - DNA Data Bank of Japan (National Institute of Genetics)
  • DNA Data Bank of Japan
  • European Bioinformatics Institute Services (EBI) center for research and services in bioinformatics
  • European Directory of DNA Laboratories (EDDNAL) intended mainly for clinical geneticists and molecular biologists. Contact names and addresses for DNA laboratories and details services on genetic diseases
  • ExPASy Molecular Biology Server (SWISS-PROT, etc.) EBI server dedicated to the analysis of protein sequences and structure as well as 2-D PAGE
  • GenBank -- National Center for Biotechnology Information
  • GeneCards Database human genes, products, and involvement in disease
  • GenLink database for human genetics and telomere research
  • Genome Channel Genome annotation and analysis
  • Genome Database mapping data
  • GOBASE organelle genome database
  • Harvard Department of Molecular and Cellular Biology
  • HGVbase (Human Genome Variation database) lists human intra-genic (promoter to transcription end point) DNA sequence polymorphisms.
  • HUGO Chromosomes Mitochondrion lists mitochondrial
  • ImMunoGeneTics Database (IMGT) nucleotide sequence information for immune system genes
  • MAFF DNA Bank Rice and animal genome projects
  • Max-Planck-Institute for Experimental Medicine: Biological Databases Genetic, Protein, and Structure Databases; Modeling; FTP Entries; and Complete Genomes
  • Micado: MICrobial Advanced Database Organisation (formerly MadBase)
  • Mitochondrial DNA Concordance
  • MitoDat - Mendelian Inheritance and the Mitochondrion
  • MITOMAP A human mitochondrial genome database
  • Molecular Biological Server computer systems, databases and programs for molecular biology
  • Molecular Biology Databases
  • Molecular Biology Jump Station collection of links for biologists
  • Mouse Genome Informatics at Jackson Laboratory includes Mouse Genome Database (MGD) and Encyclopedia of the Mouse Genome
  • NIH Funded Grants and Grant History
  • Nucleic Acid Database (NDB) and Structure Finder
  • Nucleic Acid Database (NDB) Project goal is to assemble and distribute structural information about nucleic acids
  • Online Mendelian Inheritance in Man (OMIM) Database of human genes, traits, and genetic disorders.
  • Parasite Genomes Parasite genome databases and genome research resources
  • Pfam - Protein families database of alignments and HMMs protein families database of alignments and HMMs
  • Phenylalanine Hydroxylase Locus Database
  • Protein Data Bank (PDB) Repository for 3-D macromolecular structure data
  • Protein Structure Initiative Better Tools and Better Knowledge for Structural Genomics
  • PubMed National Library of Medicine's search service for MEDLINE, Pre-MEDLINE, and related databases
  • SNP Consortium Database Single Nucleotide Polymorphisms for Biomedical Research
  • Structural Classification of Proteins database of structural and evolutionary relationships among proteins
  • Swiss-Prot Annotated database of protein amino acid sequences.
  • Telethon Institute for Genetics and Medicine
  • TIGR databases The Institute for Genomic Research
  • U.S. Dept. of Energy Microbial Cell Project
  • UMBER: University of Manchester Bioinformatics Education and Research accesses protein sequence and structure databases

  Resources

  • 123Genomics Genomics, Proteomics and Bioinformatics Knowledge Base
  • 2can Bioinformatics Educational Resource
  • Addgene Plasmid Repository for Life Sciences non-profit organization promoting sharing of plasmid constructs
  • All DNA Info DNA Directory Directory of DNA information, source, companies, products and services
  • American Type Culture Collection (ATCC) a global bioscience organization that provides biological products, technical services, and educational programs to private industry, government, and academic organizations around the world
  • BAC/PAC and YAC collection Resources for Molecular Cytogenetics
  • BACs (Bacteria Artificial Chromosomes)
  • Baylor College of Medicine Human Genome Center
  • Bibliography on Computational Gene Recognition
  • BIND--The Biomolecular Interaction Network Database
  • BioBase: Biological databases, knowledge tools and software
  • Bioinformatic resources, University of Otago, Dunedin, New Zealand includes Transterm (tools for translational control elements) and Mlogd (detects overlapping genes)
  • BIOME Internet Resources in Health and Life Sciences
  • BioMolecular Engineering Research Center and Molecular Biology Computer Research Resource
  • BIOSCI/Bionet Newsgroup Archives science and technology newsgroups in the biological sciences.
  • BIOSCI/Bionet Newsgroups BIOSCI is a set of electronic communication forums - the bionet USENET newsgroups and parallel e-mail lists - used by biological scientists worldwide.
  • BioSupplyNet On-line directory for biomedical research products and services
  • Biotechnology Resources on the Internet
  • BioToolKit an annotated directory of key molecular biology research tools.
  • Bio-Web: Resources for Molecular and Cell Biologists life sciences news, sequence analysis tools, journals and publishers, research institutions, software, and bio-links
  • Biozon a unified biological resource on DNA sequences, proteins, complexes and cellular pathways.
  • Books with Genomics Protocols
  • Broad Institute fulfulling the promise of genetics for medicine
  • Caltech Genome Research Laboratory BAC library resources, physical mapping, building framework BAC-EST map, and sequencing Pyrobaculum aerophilum.
  • Cambridge Healthtech Institute conferences and meetings
  • Canadian Bioinformatics Resource Provides access to widely used bioinformatics tools and databases.
  • Canadian Genetic Diseases Network consortium of genetic scientists and core technology facilities
  • Carolina Biologicals
  • Cell Line Data Base (CLDB) information on human and animal cell lines in Italian laboratories, European cell banks, and cell culture collections
  • Cell Signaling Technology interactive pathway images
  • Center for Biology on the Web link directory
  • Chromatin Structure and Function
  • Chromosomal Variation in Man: A Catalog of Chromosomal Variants and Anomalies and the Online Database
  • CMS Molecular Biology Resource
  • Common Access to Biological Resources and Information (CABRI)
  • Commonwealth Biotechnologies, Inc. customized project design and management
  • Computational Biochemistry Research Group
  • Computational Biosciences protein and DNA sequence analysis and annotation
  • Computational Genetics Laboratory, Dartmouth College open-source software for genetics
  • Computing Services list from Rockefeller University
  • Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from the cell cultures; collections supported by NIH and several foundations
  • CyberFiber Newsgroups check the Health, Support, and Recovery and the Science and Technology areas.
  • Dalton Chemical Laboratories, Inc.
  • DBCAT, The Public Catalog of Databases
  • DomainParser
  • EBI Macromolecular Structure Database European project for the collection, management and distribution of data about macromolecular structures, derived in part from the Protein Data Bank (PDB).
  • EMBL Nucleotide Sequence Database Europe's primary DNA and RNA sequence resource.
  • Entrez Nucleotides (GenBank) Nucleotide sequences from several sources.
  • EPAs Science Inventory Agency-wide catalog of science activities
  • European Bioinformatics Institute (EBI) European Molecular Biology Laboratory (EMBL) research center that manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures.
  • European Mouse Mutant Archive (EMMA) repository for collection, archiving (via cryopreservation) and distribution of mutant strains
  • Functional Genomics Jump Station
  • GenBank -- National Center for Biotechnology Information
  • Generic Model Organism Database Project
  • Genome Analysis Pipeline submit sequences via web interface for comprehensive analysis
  • Genome and Genetics Links
  • Genomics Research and Bioinformatics
  • GrailEXP: Grail Experimental Gene Discovery Suite software package that predicts exons, genes, promoters, polyas, CpG islands, EST similarities, and repetitive elements within DNA sequence
  • Howard Hughes Medical Institute major U.S. philanthropic organization that supports research in genetics, cell biology, immunology, structural biology, and neuroscience.
  • Human Ageing Genomic Resources databases and tools to help researchers understand the genetics of human ageing
  • Human Chromosome Launchpad Links to Research Resources by Chromosome
  • HUM-MOLGEN - Communication forum in Human Molecular Genetics discussion list, journal previews, meetings, news, and positions in bioscience and medicine
  • HyperCLDB cell culture availability in Italian and European laboratories
  • Incyte Genomics
  • INFOBIOGEN -Villejuif, France in French
  • Information for Genetic Professionals
  • Intergen Company molecular biology products
  • International Mammalian Genome Society
  • Internet Resources from Southwest Biotechnology and Informatics Center
  • Invitrogen Life Technologies, Inc.
  • Japan Science and Technology Corporation ( JST ) Advanced Lifescience Information System ( ALIS )
  • JCRB Gene Bank
  • LabVelocity integrated laboratory information service
  • Lawrence Livermore National Laboratory Biology & Biotechnology Research Program
  • Library of Congress
  • Linux Online - Category: Scientific / biology
  • Macromolecule structures requires Chime plugin to browser
  • Mammalian Genoytping Service (MGS)
  • Max-Planck-Institute for Experimental Medicine: Biological Databases Genetic, Protein, and Structure Databases; Modeling; FTP Entries; and Complete Genomes
  • MicrobiologyProcedure.com microbiology related reference resources
  • MIT Knowledge Updates educational briefings on life science topics
  • Molecular Biology Directory
  • Molecular Genetics Labs Cedars-Sinai Medical Center data on human chromosomes 11 and 21, BAC-STS map, mouse data
  • Molecular Probe Data Base
  • National Genetics Reference Laboratories Supporting the UK Genetic service Network
  • National Laboratory for the Genetics of Israeli Populations national repository for human cell lines
  • National Library of Medicine
  • Nature Technology Corporation providing vector development and manufacturing assistance
  • NC3Rs - National Centre for the Replacement, Refinement and Reduction of Animals in Research
  • Nucleics custom-made transgenic mice models
  • OmniBank e-Biology source of OmniBank knockout mouse embryonic stem cell clones
  • Oncogenomics Normal Tissue Database high-density gene expression database derived from 42,000 clone cDNA microarrays containing 18,927 unique genes for 158 normal human samples from 19 different organs of 30 different individuals
  • O'Reilly Science Center books
  • Ovarian Kaleidoscope Database biological function, expression pattern and regulation of genes expressed in the ovary
  • Parasite Genomes Parasite genome databases and genome research resources
  • PCR Jump Station (Polymerase Chain Reaction)
  • PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit)
  • PubMed National Library of Medicine's search service for MEDLINE, Pre-MEDLINE, and related databases
  • Real Time PCR Primer Sets Database of validated primer sets for quantitative real time PCR
  • Resources for Molecular Cytogenetics from the University of Bari, Italy
  • RIKEN Bioresource Center DNA Bank cultured animal and plant cell lines, DNA from Tsukuba, Japan
  • SNP Consortium Database Single Nucleotide Polymorphisms for Biomedical Research
  • Stanford Human Genome Center
  • Virtual Library Genetics a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
  • Web Guide of Polymerase Chain Reaction Technique Selected and Organized Links About PCR® Technique
  • Welch Library Online links to many Internet biomedical resources, dictionaries, encyclopedias, government sites, libraries, and more from the Johns Hopkins University Welch Library